Papers and References - listed alphabetically

Akiyama M, Miyashita H, Kise H, Watanabe T, Miyachi S and Kobayashi M (2001) Detection of chlorophyll d’and pheophytin a in a chlorophyll d-dominating oxygenic photosynthetic prokayote Acaryochloris marina. Anal Sci 17: 205-208.

Akiyama M, Miyashita H, Kise H, Watanabe T, Mimuro M, Miyachi S, and Kobayashi M (2002) Quest for minor but key chlorophyll molecules in photosynthetic reaction centers. - Unusual pigment composition in the reaction centers of the chlorophyll d-dominated cyanobacterium Acarochloris marina. Photosynth Res 74: 109-120.

Amesz J The antenna-reaction center complex of heliobacteria. In Blankenship RE, Madigan MT and Bauer CE (eds) Anoxygenic Photosynthetic Bacteria, pp 687 -697. Kluwer Academic Publishers, Dordrecht, The Netherlands.

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Bauer CE and Bird TH (1996) Regulatory circuits controlling photosynthesis gene expression. Cell 85: 5-8.

Beatty JT (2002) On the natural selection and evolution of the aerobic phototrophic bacteria. Photosynth Res 73: 109-114.

Berleman J and Bauer CE (2003) Characterization of the cyst differentiation phase of the Rhodospirillum centenum life cycle. Microbiology. In Press.

Berleman J, Hasselbring B., and Bauer CE (2004) Isolation of Rhodospirillum centenum mutants defective in cyst cycle control. In Preparation.

Blankenship RE (2002) Molecular Mechanisms of Photosynthesis, Blackwell Science, Oxford, UK.

Blankenship RE and Hartman H (1998) The origin and evolution of oxygenic photosynthesis. Trends Biochem Sci 23: 94-97.

Brockmann H and Lipinski A (1982) Bacteriochlorophyll g. A new bacteriochlorophyll from Heliobacterium chlorum. Arch Microbiol 136: 17 -19.

Bryantseva IA, Gorlenko VM, Kompantseva EI, Achenbach LA and Madigan MT (1999) Heliorestis daurensis gen. nov. sp. nov., an alkaliphilic coiled to rod-shaped phototrophic heliobacterium from an alkaline Siberian soda lake. Arch Microbiol 172: 167 -174.

Burke DH, Hearst JE and Sidow A (1993) Early evolution of photosynthesis - clues from nitrogenase and chlorophyll iron proteins. Proc. Natl. Acad. Sci. USA,90: 7134-7138.

Candela M, Zaccherini E and Zannoni D (2001) Respiratory electron transport and light-induced energy transduction in membranes from the aerobic photosynthetic bacterium Roseobacter denitrificans. Arch Microbiol 175:169-177.

Delcher AL, Harmon D, Kasif S, White O, Salzberg SL (1999) Improved Microbial Gene Identification with Glimmer. Nucleic Acids Res 27: 4636-4641.

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Elkin CJ, Richardson PM, Fourcade HM, Hammon NM, Pollard MJ, Predki PF, Glavina T and Hawkins TL (2001) High-throughput plasmid purification for capillary sequencing. Genome Res 11: 1269-1274.

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Ewing B, Hillier L, Wendl MC and Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185.

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Giraud E, Fardoux Jl, Fourrier N, Hannibal L, Genty B, Bouyer P, Dreyfus B and Verméglio A (2002) Bacteriophytochrome controls photosystem synthesis in anoxygenic bacteria. Nature 417: 202-205.

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Goericke R (2002) Bacteriochlorophyll a in the ocean: Is anoxygenic bacterial photosynthesis important? Limnol Oceanogr 47: 290-295.

Gordon D, Abajian C and Green P (1998) Consed: a graphical tool for sequence finishing. Genome Res 8: 195-202.

Gordon D, Desmarais C and Green P (2001) Automated finishing with autofinish. Genome Res 11: 614-625.

Gupta RS (2000) The natural evolutionary relationships among prokaryotes. Crit Rev Microbiol 26: 111-131.

Gupta RS (2003) Evolutionary relationships among photosynthetic bacteria. Photosyn Res 76: 173 -183.

Gupta RS, Mukhtar T and Singh B (1999) Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and Proteobacteria): implications regarding the origin of photosynthesis. Mol Microbiol 32: 893 -906.

Haft DH, Loftus BJ, Richardson DL, Yang F, Eisen JA, Paulsen IT and White O (2001) TIGRFAMs: A protein family resource for the functional identification of proteins. Nucleic Acids Res 29: 41-3.

Heathcote P, Jones MR and Fyfe PK (2003) Type I photosynthetic reaction centres: structure and function. Phil Trans R Soc Lond B Biol Sci 358: 231 -43.

Hu Q, Miyashita H, Iwasaki I, Kurano N, Miyachi S, Iwaki M, Itoh S (1998) A photosystem I reaction center driven by chlorophyll d in oxygenic photosynthesis. Proc Natl Acad Sci USA. 95: 13319-13323.

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Jaffe DB, Butler J, Gnerre S, Mauceli E, Lindblad-Toh K, Mesirov JP, Zody MC and Lander ES (2003) Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res 13, 91-96.

Jiang Z-Y and Bauer CE (2001) A component of the Rhodospirillum centenum photosensory apparatus with structural and functional similarity to methyl accepting chemotaxis proteins. J Bacteriol 183: 171-177.

Jiang Z-Y, Gest H and Bauer CE (1997) Chemosensory and photosensory perception in purple photosynthetic bacteria utilize common signal transduction components. J Bacteriol 179: 5720-5727.

Jiang Z-Y, Rushing BG, Bai Y, Gest H and Bauer CE (1998) Isolation of Rhodospirillum centenum mutants defective in phototactic colony motility by transposon mutagenesis. J Bacteriol 180: 1248-1255.

Jiang Z-Y, Swem L, Rushing B, Devanathan, S, Tollin G and Bauer CE (1999) Bacterial photoreceptor with similarity to both photoactive yellow protein and plant phytochromes. Science 285: 406-409.

Karr EL, Sattley JM, Jung DO, Madigan MT, Achenbach LA (2003) Remarkable diversity of phototrophic purple bacteria in a permanently frozen Antarctic lake. Appl Environ Microbiol 69: 4910-4914.

Kimble LK and Madigan MT (1992a) N 2 fixation and nitrogen metabolism in heliobacteria. Arch Microbiol 158: 155–161.

Kimble LK and Madigan MT (1992b) Evidence for an alternative nitrogenase system in Heliobacterium gestii. FEMS Microbiol Letts 100: 255–260.

Kimble LK and Madigan MT (2001) Molecular evidence that the capacity for endosporulation is universal among phototrophic heliobacteria. FEMS Microbiol Letts 199: 191 -195.

Kimble LK and Madigan MT (2002) Irradiance effects on growth and pigment content of heliobacteria, purple and green bacteria. Photosynthetica 40: 629 -632.

Kimble LK, Mandelco L, Woese CR and Madigan MT (1995) Heliobacterium modesticaldum, sp. nov., a thermophilic heliobacterium of hot springs and volcanic soils. Arch Microbiol 163: 259–267.

Kimble LK, Stevenson AK and Madigan MT (1994) Chemotrophic growth of heliobacteria in darkness. FEMS Microbiol Letts 115: 51–56.

Kobayashi M, Oh-oka H, Akutsu S, Akiyama M, Tominaga K, Kise H, Nishida F, Watanabe T, Amesz J, Koizumi M, Ishida N, Kano H (2000) The primary electron acceptor of green sulfur bacteria, bacteriochlorophyll 663, is chlorophyll a esterified with Delta 2,6-phytadienol. Photosynth Res 63: 269-280.

Kolber ZS, Plumley FG, Lang AS, Beatty JT, Blankenship RE, Van Dover CL, Vetriani C, Koblizek M, Rathgeber C and Falkowski PG (2001) Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science 292: 2492-2495.

Kumazaki S, Abiko K, Ikegami I, Iwaki M and Itoh S (2002) Energy equilibration and primary charge separation in chlorophyll d-based photosystem I reaction center isolated from Acaryochloris marina. FEBS Lett 530: 153-157.

Larimer FW, Chain P, Hauser L, Lamerdin J, Malfatti S, L LD, Land ML, Pelletier DA, Beatty JT, Lang AS, Tabita FR, Gibson JL, Hanson TE, Bobst C, Torres JLTy, Peres C, Harrison FH, Gibson J and Harwood CS (2004) The genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris. Nature Biotechnol, in press.

Madigan MT (1992) The Heliobacteriaceae. In Balows A, Trüper HG, Dworkin M, Harder W and Schleifer K-H (eds) The Prokaryotes, Second Edition: A handbook on the biology of bacteria ecophysiology, isolation, identification, applications, pp 1981–1992. Springer-Verlag, Berlin, New York.

Madigan MT(2001a) The family Heliobacteriaceae. In The Prokaryotes (electronic version). Springer-Verlag, New York. http://www.prokaryotes.com.

Madigan MT(2001b) Heliobacteriaceae. In Boone D, Castenholz RW and Garrity GM (eds) Bergey's Manual of Systematic Bacteriology, 2 nd ed, Vol. 1, pp 625–630. Springer-Verlag, New York.

Madigan MT (2003) Anoxygenic phototrophs from extreme environments. Photosynth Res 76: 157-171.

Madigan MT and Ormerod JG (1995) Taxonomy, physiology and ecology of heliobacteria. In Blankenship RE, Madigan MT and Bauer CE (eds) Anoxygenic Photosynthetic Bacteria, pp 17–30. Kluwer Academic Publishers, Dordrecht, The Netherlands.

Mammalian Gene Collection Program, Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, et al. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A 99: 16899-16903.

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Masuda S and Bauer CE (2002) AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides. Cell 110: 613-623.

McClain J, Rollo D, Rushing B and Bauer CE (2002) Rhodospirillum centenum swim and swarm cells utilize separate motor/switch components to control lateral and polar flagella rotation. J. Bacteriol. 184: 2429-2438.

McMurray AA, Sulston JE and Quail MA (1998) Short-insert libraries as a method of problem solving in genome sequencing. Genome Res 8: 562-566.

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Mi DH, Chen M, Lin S, Lince M, Larkum AWD and Blankenship RE (2003) Excitation dynamics in the core antenna in the photosystem I reaction center of the chlorophyll d-containing photosynthetic prokaryote Acaryochloris marina. J Phys Chem B 107: 1452-1457.

Mimuro M, Akimoto S, Yamazaki I, Miyashita M and Miyachi S (1999) Fluorescence properties of chlorophyll d-dominating prokaryotic alga, Acaryochlorismarina: Studies by means of the time-resolved spectroscopy. Biochim Biophys Acta 1412: 37-46.

Mimuro M, Akimoto S, Goto T, Yokono M, Akiyama M, Tsuchiya T, Miyashita H, Kobayashi M, and Yamazaki I (2004) Identification of the primary electron donor in PS II of the Chl d-dominated cyanobacterium Acaryochloris marina. FEBS Lett, in press.

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Miyashita H, Adachi K, Kurano N, Ikemoto H, Chihara M and Miyachi M (1997) Pigment composition of a novel oxygenic photosynthetic prokaryote containing chlorophyll d as the major chlorophyll. Plant Cell Physiol 38: 274-281.

Moens S, Schloter M and Vanderleyden J (1996a) Expression of the structural gene, laf1, encoding the flagellin of the lateral flagella in Azospirillum brasilense Sp7. J Bacteriol 178: 5017-5019.

Moens S, Michiels K and Vanderleyden J (1996b) Glycosylation of the flagellin of the polar flagellum of Azospirilum brasilense, a Gram-negative nitrogen-fixing bacterium. Microbiology 141: 2651-2657.

Nickens D, Fry CJ, Ragatz, LR, Bauer CE and Gest H (1996) Biotype of the nonsulfur purple photosynthetic bacterium, Rhodospirillum centenum. Archives for Microbiol 165: 91-96.

Nikaido I, Asamizu E, Nakajima M, Nakamura Y, Saga N and Tabata S (2000) Generation of 10,154 Expressed Sequence Tags from a Leafy Gametophyte of a Marine Red Alga, Porphyra yezoensis. DNA Research 7: 223-227.

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Olson JM and Blankenship RE (2004) History of thinking about the evolution of photosynthesis. Photosynth Res In Press.

Ormerod J (2003) Every dogma has its day: a personal look at carbon metabolism in photosynthetic bacteria. Photosynth Res 76: 135-143.

Ormerod JG, Kimble LK, Nesbakken T, Torgersen TA, Woese CR and Madigan MT (1996) Heliophilum fasciatum gen. nov. et sp. nov., and Heliobacterium gestii sp. nov.: endospore-forming heliobacteria from rice field soils. Arch Microbiol 165: 226–234.

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